Immunologic, virologic and drug resistance outcomes in an HIV-infected prospective cohort on treatment in South Africa
JOURNAL: PLoS ONE
Volume: 19
Issue: 8
Volume: 19
Issue: 8
article
26-August-2024
Publications
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DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884245;
Sample name: AHDR-T011-F4;
SRA: SRS19889466;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual T011-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-12-04
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 22.9761 S 30.4465 E
Host Sex: male
Host Subject ID: T011
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884245
ID: 38884245DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884244;
Sample name: AHDR-T004-F4;
SRA: SRS19889465;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual T004-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-10-03
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 22.9761 S 30.4465 E
Host Sex: female
Host Subject ID: T004
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884244
ID: 38884244DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884243;
Sample name: AHDR-S094-F4;
SRA: SRS19889463;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S094-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2018-05-02
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S094
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884243
ID: 38884243DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884242;
Sample name: AHDR-S084-F4;
SRA: SRS19889462;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S084-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2018-01-11
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S084
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884242
ID: 38884242DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884241;
Sample name: AHDR-S058-F4;
SRA: SRS19889461;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S058-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2018-03-11
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S058
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884241
ID: 38884241DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884240;
Sample name: AHDR-S055-F4;
SRA: SRS19889460;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S055-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-10-09
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S055
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884240
ID: 38884240DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884239;
Sample name: AHDR-S046-F4;
SRA: SRS19889458;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S046-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-10-10
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S046
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884239
ID: 38884239DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884238;
Sample name: AHDR-S032-F4;
SRA: SRS19889459;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S032-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-11-06
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S032
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884238
ID: 38884238DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884237;
Sample name: AHDR-S015-F4;
SRA: SRS19889457;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S015-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-07-17
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S015
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884237
ID: 38884237DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884236;
Sample name: AHDR-S011-F4;
SRA: SRS19889455;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S011-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-07-31
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S011
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884236
ID: 38884236DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884235;
Sample name: AHDR-S009-F4;
SRA: SRS19889454;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S009-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-08-08
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S009
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884235
ID: 38884235DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884234;
Sample name: AHDR-R340-F4;
SRA: SRS19889453;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R340-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2018-05-15
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R340
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884234
ID: 38884234DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884233;
Sample name: AHDR-R294-F4;
SRA: SRS19889452;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R294-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2018-05-08
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R294
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884233
ID: 38884233DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884232;
Sample name: AHDR-R257-F4;
SRA: SRS19889451;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R257-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2018-02-01
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R257
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884232
ID: 38884232DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884231;
Sample name: AHDR-R240-F4;
SRA: SRS19889450;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R240-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-11-29
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R240
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884231
ID: 38884231DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884230;
Sample name: AHDR-R211-F4;
SRA: SRS19889449;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R211-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-10-27
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R211
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884230
ID: 38884230DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884229;
Sample name: AHDR-R162-F4;
SRA: SRS19889448;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R162-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-07-27
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R162
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884229
ID: 38884229DNA sequence of HIV-1 from ART-experienced individual for 12 months
Identifiers
BioSample: SAMN38884228;
Sample name: AHDR-R099-F4;
SRA: SRS19889446;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R099-F4
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-05-23
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R099
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884228
ID: 38884228DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884227;
Sample name: AHDR-T011-F3;
SRA: SRS19889444;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual T011-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-10-02
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 22.9761 S 30.4465 E
Host Sex: male
Host Subject ID: T011
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884227
ID: 38884227DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884226;
Sample name: AHDR-S111-F3;
SRA: SRS19889447;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S111-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2018-01-11
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S111
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884226
ID: 38884226DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884225;
Sample name: AHDR-S109-F3;
SRA: SRS19889529;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S109-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2018-01-08
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S109
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884225
ID: 38884225DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884224;
Sample name: AHDR-S093-F3;
SRA: SRS19889527;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S093-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-12-12
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S093
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884224
ID: 38884224DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884223;
Sample name: AHDR-S088-F3;
SRA: SRS19889528;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S088-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-12-05
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S088
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884223
ID: 38884223DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884222;
Sample name: AHDR-S086-F3;
SRA: SRS19889526;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S086-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-12-06
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S086
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884222
ID: 38884222DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884221;
Sample name: AHDR-S084-F3;
SRA: SRS19889524;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S084-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-10-18
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S084
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884221
ID: 38884221DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884220;
Sample name: AHDR-S064-F3;
SRA: SRS19889525;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S064-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-11-21
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S064
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884220
ID: 38884220DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884219;
Sample name: AHDR-S054-F3;
SRA: SRS19889523;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S054-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-11-21
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S054
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884219
ID: 38884219DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884218;
Sample name: AHDR-S046-F3;
SRA: SRS19889522;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S046-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-07-24
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S046
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884218
ID: 38884218DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884217;
Sample name: AHDR-S041-F3;
SRA: SRS19889521;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S041-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-08-01
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S041
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884217
ID: 38884217DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884216;
Sample name: AHDR-S032-F3;
SRA: SRS19889520;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S032-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-07-10
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S032
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884216
ID: 38884216DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884215;
Sample name: AHDR-S031-F3;
SRA: SRS19889519;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S031-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-07-17
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S031
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884215
ID: 38884215DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884214;
Sample name: AHDR-S015-F3;
SRA: SRS19889518;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S015-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-04-24
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S015
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884214
ID: 38884214DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884213;
Sample name: AHDR-S011-F3;
SRA: SRS19889515;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S011-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-04-24
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S011
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884213
ID: 38884213DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884212;
Sample name: AHDR-S009-F3;
SRA: SRS19889516;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S009-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-04-05
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S009
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884212
ID: 38884212DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884211;
Sample name: AHDR-R335-F3;
SRA: SRS19889514;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R335-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2018-02-06
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R335
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884211
ID: 38884211DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884210;
Sample name: AHDR-R324-F3;
SRA: SRS19889511;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R324-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2018-02-13
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R324
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884210
ID: 38884210DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884209;
Sample name: AHDR-R314-F3;
SRA: SRS19889512;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R314-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2018-02-06
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R314
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884209
ID: 38884209DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884208;
Sample name: AHDR-R313-F3;
SRA: SRS19889513;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R313-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2018-02-15
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R313
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884208
ID: 38884208DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884207;
Sample name: AHDR-R310-F3;
SRA: SRS19889510;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R310-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2018-02-27
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R310
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884207
ID: 38884207DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884206;
Sample name: AHDR-R294-F3;
SRA: SRS19889508;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R294-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2018-02-06
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R294
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884206
ID: 38884206DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884205;
Sample name: AHDR-R262-F3;
SRA: SRS19889509;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R262-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-10-03
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R262
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884205
ID: 38884205DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884204;
Sample name: AHDR-R257-F3;
SRA: SRS19889506;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R257-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-10-02
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R257
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884204
ID: 38884204DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884203;
Sample name: AHDR-R256-F3;
SRA: SRS19889562;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R256-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-08-03
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R256
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884203
ID: 38884203DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884202;
Sample name: AHDR-R238-F3;
SRA: SRS19889560;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R238-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-07-20
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R238
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884202
ID: 38884202DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884201;
Sample name: AHDR-R211-F3;
SRA: SRS19889558;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R211-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-08-04
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R211
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884201
ID: 38884201DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884200;
Sample name: AHDR-R204-F3;
SRA: SRS19889559;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R204-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-07-20
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R204
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884200
ID: 38884200DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884199;
Sample name: AHDR-R171-F3;
SRA: SRS19889557;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R171-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-08-12
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R171
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884199
ID: 38884199DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884198;
Sample name: AHDR-R156-F3;
SRA: SRS19889556;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R156-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-05-16
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R156
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884198
ID: 38884198DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884197;
Sample name: AHDR-R128-F3;
SRA: SRS19889555;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R128-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-04-25
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R128
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884197
ID: 38884197DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884196;
Sample name: AHDR-R062-F3;
SRA: SRS19889554;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R062-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-02-20
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R062
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884196
ID: 38884196DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884195;
Sample name: AHDR-R043-F3;
SRA: SRS19889551;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R043-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-01-19
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R043
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884195
ID: 38884195DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884194;
Sample name: AHDR-R013-F3;
SRA: SRS19889552;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R013-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-12-08
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R013
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884194
ID: 38884194DNA sequence of HIV-1 from ART-experienced individual for 9 months
Identifiers
BioSample: SAMN38884193;
Sample name: AHDR-R012-F3;
SRA: SRS19889550;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R012-F3
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-12-20
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R012
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884193
ID: 38884193DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884192;
Sample name: AHDR-S110-F2;
SRA: SRS19889549;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S110-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-11-05
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S110
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884192
ID: 38884192DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884191;
Sample name: AHDR-S108-F2;
SRA: SRS19889547;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S108-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-11-30
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S108
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884191
ID: 38884191DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884190;
Sample name: AHDR-S103-F2;
SRA: SRS19889548;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S103-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-10-23
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S103
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884190
ID: 38884190DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884189;
Sample name: AHDR-S088-F2;
SRA: SRS19889546;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S088-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-09-12
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S088
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884189
ID: 38884189DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884188;
Sample name: AHDR-S086-F2;
SRA: SRS19889545;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S086-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-09-11
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S086
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884188
ID: 38884188DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884187;
Sample name: AHDR-S081-F2;
SRA: SRS19889544;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S081-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-09-16
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S081
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884187
ID: 38884187DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884186;
Sample name: AHDR-S064-F2;
SRA: SRS19889543;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S064-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-07-31
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S064
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884186
ID: 38884186DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884185;
Sample name: AHDR-S058-F2;
SRA: SRS19889541;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S058-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-09-05
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S058
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884185
ID: 38884185DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884184;
Sample name: AHDR-S057-F2;
SRA: SRS19889540;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S057-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-08-02
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S057
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884184
ID: 38884184DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884183;
Sample name: AHDR-S055-F2;
SRA: SRS19889539;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S055-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-07-31
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S055
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884183
ID: 38884183DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884182;
Sample name: AHDR-S046-F2;
SRA: SRS19889538;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S046-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-04-24
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S046
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884182
ID: 38884182DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884181;
Sample name: AHDR-S041-F2;
SRA: SRS19889535;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S041-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-04-11
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S041
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884181
ID: 38884181DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884180;
Sample name: AHDR-S025-F2;
SRA: SRS19889536;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S025-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-04-19
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S025
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884180
ID: 38884180DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884179;
Sample name: AHDR-S015-F2;
SRA: SRS19889537;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S015-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-01-16
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S015
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884179
ID: 38884179DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884178;
Sample name: AHDR-S011-F2;
SRA: SRS19889534;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S011-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-01-18
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S011
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884178
ID: 38884178DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884177;
Sample name: AHDR-S008-F2;
SRA: SRS19889533;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S008-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-01-17
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S008
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884177
ID: 38884177DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884176;
Sample name: AHDR-S007-F2;
SRA: SRS19889531;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S007-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-01-18
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S007
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884176
ID: 38884176DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884175;
Sample name: AHDR-S002-F2;
SRA: SRS19889530;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S002-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-11-23
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S002
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884175
ID: 38884175DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884174;
Sample name: AHDR-R340-F2;
SRA: SRS19889504;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R340-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-12-12
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R340
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884174
ID: 38884174DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884173;
Sample name: AHDR-R335-F2;
SRA: SRS19889505;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R335-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2018-02-06
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R335
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884173
ID: 38884173DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884172;
Sample name: AHDR-R331-F2;
SRA: SRS19889502;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R331-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2018-01-30
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R331
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884172
ID: 38884172DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884171;
Sample name: AHDR-R274-F2;
SRA: SRS19889503;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R274-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-08-16
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R274
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884171
ID: 38884171DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884170;
Sample name: AHDR-R261-F2;
SRA: SRS19889501;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R261-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-08-03
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R261
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884170
ID: 38884170DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884169;
Sample name: AHDR-R256-F2;
SRA: SRS19889499;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R256-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-06-08
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R256
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884169
ID: 38884169DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884168;
Sample name: AHDR-R243-F2;
SRA: SRS19889500;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R243-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-07-17
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R243
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884168
ID: 38884168DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884167;
Sample name: AHDR-R240-F2;
SRA: SRS19889498;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R240-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-06-08
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R240
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884167
ID: 38884167DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884166;
Sample name: AHDR-R204-F2;
SRA: SRS19889497;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R204-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-04-20
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R204
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884166
ID: 38884166DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884165;
Sample name: AHDR-R170-F2;
SRA: SRS19889495;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R170-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-03-22
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R170
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884165
ID: 38884165DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884164;
Sample name: AHDR-R162-F2;
SRA: SRS19889494;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R162-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-03-03
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R162
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884164
ID: 38884164DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884163;
Sample name: AHDR-R156-F2;
SRA: SRS19889493;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R156-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-02-21
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R156
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884163
ID: 38884163DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884162;
Sample name: AHDR-R128-F2;
SRA: SRS19889492;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R128-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-01-17
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R128
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884162
ID: 38884162DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884161;
Sample name: AHDR-R121-F2;
SRA: SRS19889491;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R121-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-01-23
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R121
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884161
ID: 38884161DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884160;
Sample name: AHDR-R099-F2;
SRA: SRS19889490;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R099-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-12-06
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R099
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884160
ID: 38884160DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884159;
Sample name: AHDR-R067-F2;
SRA: SRS19889489;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R067-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-11-16
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R067
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884159
ID: 38884159DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884158;
Sample name: AHDR-R062-F2;
SRA: SRS19889488;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R062-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-11-16
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R062
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884158
ID: 38884158DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884157;
Sample name: AHDR-R043-F2;
SRA: SRS19889487;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R043-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-10-04
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R043
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884157
ID: 38884157DNA sequence of HIV-1 from ART-experienced individual for 6 months
Identifiers
BioSample: SAMN38884156;
Sample name: AHDR-R012-F2;
SRA: SRS19889486;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R012-F2
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-09-20
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R012
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884156
ID: 38884156DNA sequence of HIV-1 from ART-experienced individual for 3 months
Identifiers
BioSample: SAMN38884155;
Sample name: AHDR-T011-F1;
SRA: SRS19889484;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual T011-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-03-14
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 22.9761 S 30.4465 E
Host Sex: male
Host Subject ID: T011
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884155
ID: 38884155DNA sequence of HIV-1 from ART-experienced individual for 3 months
Identifiers
BioSample: SAMN38884154;
Sample name: AHDR-S110-F1;
SRA: SRS19889482;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S110-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-08-22
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S110
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884154
ID: 38884154DNA sequence of HIV-1 from ART-experienced individual for 3 months
Identifiers
BioSample: SAMN38884153;
Sample name: AHDR-S109-F1;
SRA: SRS19889483;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S109-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-08-21
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S109
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884153
ID: 38884153DNA sequence of HIV-1 from ART-experienced individual for 3 months
Identifiers
BioSample: SAMN38884152;
Sample name: AHDR-S108-F1;
SRA: SRS19889480;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S108-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-08-31
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S108
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884152
ID: 38884152DNA sequence of HIV-1 from ART-experienced individual for 3 months
Identifiers
BioSample: SAMN38884151;
Sample name: AHDR-S086-F1;
SRA: SRS19889481;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S086-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-06-08
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S086
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884151
ID: 38884151DNA sequence of HIV-1 from ART-experienced individual for 3 months
Identifiers
BioSample: SAMN38884150;
Sample name: AHDR-S084-F1;
SRA: SRS19889479;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S084-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-05-30
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S084
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884150
ID: 38884150DNA sequence of HIV-1 from ART-experienced individual for 3 months
Identifiers
BioSample: SAMN38884149;
Sample name: AHDR-S064-F1;
SRA: SRS19889478;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S064-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-04-24
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S064
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884149
ID: 38884149DNA sequence of HIV-1 from ART-experienced individual for 3 months
Identifiers
BioSample: SAMN38884148;
Sample name: AHDR-S058-F1;
SRA: SRS19889477;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S058-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-04-25
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S058
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884148
ID: 38884148DNA sequence of HIV-1 from ART-experienced individual for 3 months
Identifiers
BioSample: SAMN38884147;
Sample name: AHDR-S057-F1;
SRA: SRS19889476;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S057-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-04-25
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S057
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100Submission: UNIVERSITY OF VENDA, Bixa Ogola; 2023-12-18
Accession: SAMN38884147
ID: 38884147DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884146;
Sample name: AHDR-S055-F1;
SRA: SRS19889475;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S055-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-03-07
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S055
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884146
ID: 38884146
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884145;
Sample name: AHDR-S046-F1;
SRA: SRS19889473;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S046-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-01-23
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S046
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884145
ID: 38884145
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884144;
Sample name: AHDR-S041-F1;
SRA: SRS19889472;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S041-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-01-09
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S041
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884144
ID: 38884144
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884143;
Sample name: AHDR-S032-F1;
SRA: SRS19889471;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S032-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-01-09
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S032
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884143
ID: 38884143
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884142;
Sample name: AHDR-S025-F1;
SRA: SRS19889470;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S025-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-01-22
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: female
Host Subject ID: S025
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884142
ID: 38884142
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884141;
Sample name: AHDR-S015-F1;
SRA: SRS19889469;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S015-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-10-19
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S015
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884141
ID: 38884141
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884140;
Sample name: AHDR-S008-F1;
SRA: SRS19889468;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual S008-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-10-17
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8464 S 29.33711 E
Host Sex: male
Host Subject ID: S008
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884140
ID: 38884140
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884139;
Sample name: AHDR-R324-F1;
SRA: SRS19889467;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R324-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-08-29
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R324
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884139
ID: 38884139
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884138;
Sample name: AHDR-R274-F1;
SRA: SRS19889464;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R274-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-05-16
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R274
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884138
ID: 38884138
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884137;
Sample name: AHDR-R262-F1;
SRA: SRS19889456;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R262-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-04-18
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R262
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884137
ID: 38884137
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884136;
Sample name: AHDR-R243-F1;
SRA: SRS19889445;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R243-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-03-20
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R243
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884136
ID: 38884136
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884135;
Sample name: AHDR-R240-F1;
SRA: SRS19889517;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R240-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-03-16
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R240
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884135
ID: 38884135
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884134;
Sample name: AHDR-R204-F1;
SRA: SRS19889507;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R204-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-01-24
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R204
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884134
ID: 38884134
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884133;
Sample name: AHDR-R171-F1;
SRA: SRS19889553;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R171-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2017-01-17
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R171
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884133
ID: 38884133
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884132;
Sample name: AHDR-R170-F1;
SRA: SRS19889542;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R170-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-12-20
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R170
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884132
ID: 38884132
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884131;
Sample name: AHDR-R156-F1;
SRA: SRS19889532;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R156-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-11-29
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R156
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884131
ID: 38884131
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884130;
Sample name: AHDR-R128-F1;
SRA: SRS19889496;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R128-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-10-21
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R128
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884130
ID: 38884130
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884129;
Sample name: AHDR-R121-F1;
SRA: SRS19889485;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R121-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-10-13
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R121
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884129
ID: 38884129
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884128;
Sample name: AHDR-R099-F1;
SRA: SRS19889474;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R099-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-09-20
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R099
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884128
ID: 38884128
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884127;
Sample name: AHDR-R067-F1;
SRA: SRS19889443;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R067-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-08-22
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: female
Host Subject ID: R067
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884127
ID: 38884127
- DNA sequence of HIV-1 from ART-experienced individual for 3 months
**Identifiers**\BioSample: SAMN38884126;
Sample name: AHDR-R012-F1;
SRA: SRS19889442;
Organism: Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
Package Pathogen: clinical or host-associated; version 1.0
Attributes
Isolate: HIV-1 ART-treated individual R012-F1
Collected by: SAMRC-UNIVEN Antimicrobial Resistance and Global Health Research Unit, HIV/AIDS & Global Health Research Programme, University of Venda
Collection date: 2016-07-07
geographic location: South Africa-Limpopo province
Host: Homo sapiens
Host disease: AIDS
Isolation source: HIV-1 Positive blood
Latitude and Longitude: 23.8911 S 29.4622 E
Host Sex: male
Host Subject ID: R012
Subtype: HIV-1 Group M subtype C
BioProject: PRJNA1054100
Submission: UNIVERSITY OF VENDA, **Bixa Ogola**; 2023-12-18
Accession: SAMN38884126
ID: 38884126